### Navigation

- index
- modules |
- modules |
- next |
- previous |
- SciPy v0.12 Reference Guide (DRAFT) »
- Clustering package (`scipy.cluster`) »
- Hierarchical clustering (`scipy.cluster.hierarchy`) »

# scipy.cluster.hierarchy.fclusterdata

`scipy.cluster.hierarchy.``fclusterdata`(X, t, criterion='inconsistent', metric='euclidean', depth=2, method='single', R=None)

  Cluster observation data using a given metric.

  Clusters the original observations in the n-by-m data matrix X (n observations in m dimensions), using the euclidean distance metric to calculate distances between original observations, performs hierarchical clustering using the single linkage algorithm, and forms flat clusters using the inconsistency method with t as the cut-off threshold.

  A one-dimensional array T of length n is returned. T[i] is the index of the flat cluster to which the original observation i belongs.

  Parameters : | X : (N, M) ndarray N by M data matrix with N observations in M dimensions. t : float The threshold to apply when forming flat clusters. criterion : str, optional Specifies the criterion for forming flat clusters. Valid values are ‘inconsistent’ (default), ‘distance’, or ‘maxclust’ cluster formation algorithms. See `fcluster` for descriptions. metric : str, optional The distance metric for calculating pairwise distances. See `distance.pdist` for descriptions and linkage to verify compatibility with the linkage method. depth : int, optional The maximum depth for the inconsistency calculation. See `inconsistent` for more information. method : str, optional The linkage method to use (single, complete, average, weighted, median centroid, ward). See `linkage` for more information. Default is “single”. R : ndarray, optional The inconsistency matrix. It will be computed if necessary if it is not passed.
  Returns : | fclusterdata : ndarray A vector of length n. T[i] is the flat cluster number to which original observation i belongs.

  Notes

  This function is similar to the MATLAB function clusterdata.

### Navigation

- index
- modules |
- modules |
- next |
- previous |
- SciPy v0.12 Reference Guide (DRAFT) »
- Clustering package (`scipy.cluster`) »
- Hierarchical clustering (`scipy.cluster.hierarchy`) »